No. words: 1866; after pruning: 1840


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:1007)  824  0.12 0.23 0.35  USDA005R3_D05_BE443588As02P004A05A11R3_041.ab1       58   917 (0)  C USDA005F3_D05_BE443588As02P004A05A11F3_041.ab1   (0)   949    91 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  412 nodes

 208 str. conn. components

Path
    1    USDA005R3_D05_BE443588As02P004A05A11R3_041.ab1     1 
  420  C USDA005F3_D05_BE443588As02P004A05A11F3_041.ab1   589 
  432    USDA005R3_D05_BE443588As02P004A05A11R3_041.ab1   432 
  556  C USDA005F3_D05_BE443588As02P004A05A11F3_041.ab1   453 
Contig length: old 1008, new 1008

Contig length: old 1008, new 1008
New start: 0