No. words: 1596; after pruning: 1570


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1100)  477  0.00 0.20 0.20  USDA005R3_E05_BE443588At01P004A05A11R3_039.ab1      323   817 (0)  C USDA005F3_E05_BE443588At01P004A05A11F3_039.ab1   (0)   779   285 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    USDA005R3_E05_BE443588At01P004A05A11R3_039.ab1     1 
  454  C USDA005F3_E05_BE443588At01P004A05A11F3_039.ab1   648 
  478    USDA005R3_E05_BE443588At01P004A05A11R3_039.ab1   478 
  486  C USDA005F3_E05_BE443588At01P004A05A11F3_039.ab1   616 
  574    USDA005R3_E05_BE443588At01P004A05A11R3_039.ab1   574 
  586  C USDA005F3_E05_BE443588At01P004A05A11F3_039.ab1   516 
Contig length: old 1101, new 1101

Contig length: old 1101, new 1101
New start: 0