No. words: 1587; after pruning: 1561


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:1127)  451  0.00 0.00 0.00  USDA005R3_F05_BE443588At02P004A05A11R3_037.ab1      362   820 (0)  C USDA005F3_F05_BE443588At02P004A05A11F3_037.ab1   (0)   767   309 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    USDA005R3_F05_BE443588At02P004A05A11R3_037.ab1     1 
  501  C USDA005F3_F05_BE443588At02P004A05A11F3_037.ab1   628 
  533    USDA005R3_F05_BE443588At02P004A05A11R3_037.ab1   533 
  545  C USDA005F3_F05_BE443588At02P004A05A11F3_037.ab1   584 
Contig length: old 1128, new 1128

Contig length: old 1128, new 1128
New start: 0