No. words: 1685; after pruning: 1645


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (1,1:1039)  600  0.15 0.46 0.46  USDA005R3_G05_BE443588Ld01P004A05A11R3_035.ab1      140   785 (0)  C USDA005F3_G05_BE443588Ld01P004A05A11F3_035.ab1   (0)   900   255 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1    USDA005R3_G05_BE443588Ld01P004A05A11R3_035.ab1     1 
  403  C USDA005F3_G05_BE443588Ld01P004A05A11F3_035.ab1   639 
  427    USDA005R3_G05_BE443588Ld01P004A05A11R3_035.ab1   427 
  451  C USDA005F3_G05_BE443588Ld01P004A05A11F3_035.ab1   591 
  467    USDA005R3_G05_BE443588Ld01P004A05A11R3_035.ab1   467 
  471  C USDA005F3_G05_BE443588Ld01P004A05A11F3_035.ab1   571 
  527    USDA005R3_G05_BE443588Ld01P004A05A11R3_035.ab1   527 
  535  C USDA005F3_G05_BE443588Ld01P004A05A11F3_035.ab1   507 
Contig length: old 1040, new 1041

Contig length: old 1041, new 1041
New start: 0