No. words: 1656; after pruning: 1630


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:1029)  611  0.00 0.00 0.00  USDA005R3_A06_BE443588Ld03P004A05A11R3_048.ab1      217   842 (0)  C USDA005F3_A06_BE443588Ld03P004A05A11F3_048.ab1   (0)   814   189 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1    USDA005R3_A06_BE443588Ld03P004A05A11R3_048.ab1     1 
  364  C USDA005F3_A06_BE443588Ld03P004A05A11F3_048.ab1   667 
  368    USDA005R3_A06_BE443588Ld03P004A05A11R3_048.ab1   368 
  380  C USDA005F3_A06_BE443588Ld03P004A05A11F3_048.ab1   651 
  468    USDA005R3_A06_BE443588Ld03P004A05A11R3_048.ab1   468 
  560  C USDA005F3_A06_BE443588Ld03P004A05A11F3_048.ab1   471 
Contig length: old 1030, new 1030

Contig length: old 1030, new 1030
New start: 0