No. words: 1683; after pruning: 1629


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:1049)  607  0.32 0.00 0.16  USDA005R3_B06_BE443588Ld04P004A05A11R3_046.ab1      158   791 (0)  C USDA005F3_B06_BE443588Ld04P004A05A11F3_046.ab1   (0)   892   260 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1    USDA005R3_B06_BE443588Ld04P004A05A11R3_046.ab1     1 
  365  C USDA005F3_B06_BE443588Ld04P004A05A11F3_046.ab1   686 
  401    USDA005R3_B06_BE443588Ld04P004A05A11R3_046.ab1   401 
  405  C USDA005F3_B06_BE443588Ld04P004A05A11F3_046.ab1   646 
  493    USDA005R3_B06_BE443588Ld04P004A05A11R3_046.ab1   493 
  509  C USDA005F3_B06_BE443588Ld04P004A05A11F3_046.ab1   542 
  529    USDA005R3_B06_BE443588Ld04P004A05A11R3_046.ab1   529 
  533  C USDA005F3_B06_BE443588Ld04P004A05A11F3_046.ab1   518 
Contig length: old 1050, new 1050

Contig length: old 1050, new 1050
New start: 0