No. words: 1573; after pruning: 1547


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:1029)  511  1.10 0.00 0.00  USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1      234   776 (0)  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   (0)   797   255 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1     1 
  405  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   626 
  409    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   409 
  413  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   618 
  457    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   457 
  465  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   566 
  469    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   469 
  473  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   558 
  485    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   485 
  513  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   518 
  529    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   529 
  537  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   494 
  545    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   545 
  549  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   482 
  633    USDA005R3_D06_BE443588Ld06P004A05A11R3_042.ab1   633 
  637  C USDA005F3_D06_BE443588Ld06P004A05A11F3_042.ab1   394 
Contig length: old 1030, new 1030

Contig length: old 1030, new 1030
New start: 0