No. words: 1731; after pruning: 1705


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:1031)  675  0.00 0.00 0.14  USDA005R3_G06_BE443588Ld09P004A05A11R3_036.ab1       88   787 (0)  C USDA005F3_G06_BE443588Ld09P004A05A11F3_036.ab1   (0)   944   246 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  348 nodes

 176 str. conn. components

Path
    1    USDA005R3_G06_BE443588Ld09P004A05A11R3_036.ab1     1 
  250  C USDA005F3_G06_BE443588Ld09P004A05A11F3_036.ab1   783 
  254    USDA005R3_G06_BE443588Ld09P004A05A11R3_036.ab1   254 
  318  C USDA005F3_G06_BE443588Ld09P004A05A11F3_036.ab1   715 
  322    USDA005R3_G06_BE443588Ld09P004A05A11R3_036.ab1   322 
  354  C USDA005F3_G06_BE443588Ld09P004A05A11F3_036.ab1   679 
  358    USDA005R3_G06_BE443588Ld09P004A05A11R3_036.ab1   358 
  366  C USDA005F3_G06_BE443588Ld09P004A05A11F3_036.ab1   667 
Contig length: old 1032, new 1032

Contig length: old 1032, new 1032
New start: 0