No. words: 1826; after pruning: 1800


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:1054)  739  0.26 0.26 0.13  USDA005R3_H06_BE443588Ld10P004A05A11R3_034.ab1      118   888 (0)  C USDA005F3_H06_BE443588Ld10P004A05A11F3_034.ab1   (0)   938   167 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    USDA005R3_H06_BE443588Ld10P004A05A11R3_034.ab1     1 
  337  C USDA005F3_H06_BE443588Ld10P004A05A11F3_034.ab1   720 
  345    USDA005R3_H06_BE443588Ld10P004A05A11R3_034.ab1   345 
  361  C USDA005F3_H06_BE443588Ld10P004A05A11F3_034.ab1   696 
  365    USDA005R3_H06_BE443588Ld10P004A05A11R3_034.ab1   365 
  369  C USDA005F3_H06_BE443588Ld10P004A05A11F3_034.ab1   688 
  401    USDA005R3_H06_BE443588Ld10P004A05A11R3_034.ab1   401 
  405  C USDA005F3_H06_BE443588Ld10P004A05A11F3_034.ab1   652 
Contig length: old 1055, new 1056

Contig length: old 1056, new 1056
New start: 0