No. words: 1818; after pruning: 1792


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.4 (1,1:1043)  750  0.26 0.13 0.00  USDA005R3_A05_BE443588Tu01P004A05A11R3_047.ab1      132   904 (0)  C USDA005F3_A05_BE443588Tu01P004A05A11F3_047.ab1   (0)   914   141 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1    USDA005R3_A05_BE443588Tu01P004A05A11R3_047.ab1     1 
  274  C USDA005F3_A05_BE443588Tu01P004A05A11F3_047.ab1   772 
  278    USDA005R3_A05_BE443588Tu01P004A05A11R3_047.ab1   278 
  354  C USDA005F3_A05_BE443588Tu01P004A05A11F3_047.ab1   692 
  358    USDA005R3_A05_BE443588Tu01P004A05A11R3_047.ab1   358 
  374  C USDA005F3_A05_BE443588Tu01P004A05A11F3_047.ab1   672 
  494    USDA005R3_A05_BE443588Tu01P004A05A11R3_047.ab1   494 
  498  C USDA005F3_A05_BE443588Tu01P004A05A11F3_047.ab1   548 
Contig length: old 1044, new 1045

Contig length: old 1045, new 1045
New start: 0