No. words: 1813; after pruning: 1773


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:1031)  728  0.64 0.13 0.51  USDA005R3_B05_BE443588Tu02P004A05A11R3_045.ab1       35   818 (0)  C USDA005F3_B05_BE443588Tu02P004A05A11F3_045.ab1   (0)   995   215 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    USDA005R3_B05_BE443588Tu02P004A05A11R3_045.ab1     1 
  342  C USDA005F3_B05_BE443588Tu02P004A05A11F3_045.ab1   691 
  346    USDA005R3_B05_BE443588Tu02P004A05A11R3_045.ab1   346 
  374  C USDA005F3_B05_BE443588Tu02P004A05A11F3_045.ab1   659 
  402    USDA005R3_B05_BE443588Tu02P004A05A11R3_045.ab1   402 
  406  C USDA005F3_B05_BE443588Tu02P004A05A11F3_045.ab1   627 
Contig length: old 1032, new 1032

Contig length: old 1032, new 1032
New start: 0