No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (1,1:1216)  262  0.00 0.00 0.36  USDA005R3_D03_BE443797As02P004A04A10R3_025.ab1      450   729 (0)  C USDA005F3_D03_BE443797As02P004A04A10F3_025.ab1   (0)   767   489 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    USDA005R3_D03_BE443797As02P004A04A10R3_025.ab1     1 
  586  C USDA005F3_D03_BE443797As02P004A04A10F3_025.ab1   632 
  614    USDA005R3_D03_BE443797As02P004A04A10R3_025.ab1   614 
  618  C USDA005F3_D03_BE443797As02P004A04A10F3_025.ab1   600 
Contig length: old 1217, new 1217

Contig length: old 1217, new 1217
New start: 0