No. words: 1621; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:1349)  251  0.00 0.37 0.00  USDA005R3_E03_BE443797At01P004A04A10R3_023.ab1      547   816 (0)  C USDA005F3_E03_BE443797At01P004A04A10F3_023.ab1   (0)   805   535 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1    USDA005R3_E03_BE443797At01P004A04A10R3_023.ab1     1 
  610  C USDA005F3_E03_BE443797At01P004A04A10F3_023.ab1   742 
  614    USDA005R3_E03_BE443797At01P004A04A10R3_023.ab1   614 
  618  C USDA005F3_E03_BE443797At01P004A04A10F3_023.ab1   734 
  622    USDA005R3_E03_BE443797At01P004A04A10R3_023.ab1   622 
  630  C USDA005F3_E03_BE443797At01P004A04A10F3_023.ab1   722 
Contig length: old 1350, new 1351

Contig length: old 1351, new 1351
New start: 0