No. words: 1621; after pruning: 1581


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:1419)  190  0.50 0.00 0.00  USDA005R3_F03_BE443797At02P004A04A10R3_021.ab1      582   782 (0)  C USDA005F3_F03_BE443797At02P004A04A10F3_021.ab1   (0)   839   639 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1    USDA005R3_F03_BE443797At02P004A04A10R3_021.ab1     1 
  599  C USDA005F3_F03_BE443797At02P004A04A10F3_021.ab1   822 
  603    USDA005R3_F03_BE443797At02P004A04A10R3_021.ab1   603 
  643  C USDA005F3_F03_BE443797At02P004A04A10F3_021.ab1   778 
  655    USDA005R3_F03_BE443797At02P004A04A10R3_021.ab1   655 
  663  C USDA005F3_F03_BE443797At02P004A04A10F3_021.ab1   758 
  667    USDA005R3_F03_BE443797At02P004A04A10R3_021.ab1   667 
  671  C USDA005F3_F03_BE443797At02P004A04A10F3_021.ab1   750 
Contig length: old 1420, new 1420

Contig length: old 1420, new 1420
New start: 0