No. words: 1707; after pruning: 1681


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:1228)  444  0.00 0.42 0.00  USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1      408   883 (0)  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   (0)   824   347 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1    USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1     1 
  550  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   681 
  562    USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1   562 
  570  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   661 
  586    USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1   586 
  594  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   637 
  602    USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1   602 
  606  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   625 
  622    USDA005R3_E04_BE443797Ld07P004A04A10R3_024.ab1   622 
  626  C USDA005F3_E04_BE443797Ld07P004A04A10F3_024.ab1   605 
Contig length: old 1229, new 1230

Contig length: old 1230, new 1230
New start: 0