No. words: 1592; after pruning: 1552


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.3 (1,1:1003)  558  0.34 0.00 0.00  USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1      188   772 (3)  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   (0)   817   233 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1    USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1     1 
  203  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   802 
  207    USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1   207 
  323  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   682 
  331    USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1   331 
  339  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   666 
  347    USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1   347 
  387  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   618 
  391    USDA018F_C08_BE443797Ta11P035B03P004A101F1_060.ab1   391 
  403  C USDA018R_C08_BE443797Ta11P035B03P004A101R1_060.ab1   602 
Contig length: old 1004, new 1004

Contig length: old 1004, new 1004
New start: 0