No. words: 1449; after pruning: 1423


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:683)  657  0.00 0.15 0.00  USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1        1   684 (49)  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   (31)   685     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   716 
   63    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1    31 
   83  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   634 
   95    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1    63 
   99  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   618 
  107    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1    75 
  191  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   526 
  203    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   171 
  435  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   282 
  439    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   407 
  455  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   262 
  467    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   435 
  535  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   182 
  603    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   571 
  607  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1   110 
  675    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   643 
  679  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1    38 
  683    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   651 
  687  C USDA024R_C08_BE443797Ta11P043F07P004A041R1_060.ab1    30 
  695    USDA024F_C08_BE443797Ta11P043F07P004A041F1_060.ab1   663 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0