No. words: 1601; after pruning: 1575


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:978)  585  0.64 0.00 0.00  USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1      151   772 (0)  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   (0)   829   208 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1     1 
  190  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   790 
  194    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1   194 
  310  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   670 
  314    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1   314 
  318  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   662 
  322    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1   322 
  326  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   654 
  330    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1   330 
  354  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   626 
  358    USDA018F_D08_BE443797Ta12P035B03P004A101F1_058.ab1   358 
  402  C USDA018R_D08_BE443797Ta12P035B03P004A101R1_058.ab1   578 
Contig length: old 979, new 979

Contig length: old 979, new 979
New start: 0