No. words: 1435; after pruning: 1409


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:684)  658  0.00 0.15 0.00  USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1        1   685 (50)  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   (14)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   700 
   46    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1    31 
   58  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   643 
   74    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1    59 
   82  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   619 
   86    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1    71 
   94  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   607 
  106    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1    91 
  118  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   583 
  122    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   107 
  174  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   527 
  190    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   175 
  306  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   395 
  314    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   299 
  518  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   183 
  546    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   531 
  554  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   147 
  558    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   543 
  562  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   139 
  570    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   555 
  578  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   123 
  586    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   571 
  590  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1   111 
  598    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   583 
  602  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1    99 
  630    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   615 
  634  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1    67 
  678    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   663 
  690  C USDA024R_D08_BE443797Ta12P043F07P004A041R1_058.ab1    11 
  694    USDA024F_D08_BE443797Ta12P043F07P004A041F1_058.ab1   679 
Contig length: old 750, new 750

Contig length: old 750, new 750
New start: 0