No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:999)  484  0.57 0.00 0.38  USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1      120   644 (0)  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   (0)   880   358 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1    USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1     1 
  325  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   676 
  329    USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1   329 
  365  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   636 
  369    USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1   369 
  385  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   616 
  389    USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1   389 
  409  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   592 
  413    USDA018F_E08_BE443797Ta13P035B03P004A101F1_056.ab1   413 
  417  C USDA018R_E08_BE443797Ta13P035B03P004A101R1_056.ab1   584 
Contig length: old 1000, new 1000

Contig length: old 1000, new 1000
New start: 0