No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:684)  658  0.00 0.15 0.00  USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1        1   685 (50)  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   (32)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   718 
   64    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1    31 
   84  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   635 
   92    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1    59 
  116  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   603 
  120    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1    87 
  192  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   527 
  196    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   163 
  488  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   231 
  492    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   459 
  536  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   183 
  548    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   515 
  552  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   167 
  564    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   531 
  572  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   147 
  584    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   551 
  588  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   131 
  604    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   571 
  608  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1   111 
  624    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   591 
  628  C USDA024R_E08_BE443797Ta13P043F07P004A041R1_056.ab1    91 
  708    USDA024F_E08_BE443797Ta13P043F07P004A041F1_056.ab1   675 
Contig length: old 768, new 768

Contig length: old 768, new 768
New start: 0