No. words: 1564; after pruning: 1538


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:1002)  522  0.89 0.00 0.00  USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1      194   754 (0)  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   (0)   810   250 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1    USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1     1 
  205  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   799 
  209    USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1   209 
  346  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   658 
  350    USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1   350 
  370  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   634 
  378    USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1   378 
  414  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   590 
  418    USDA018F_F08_BE443797Ta14P035B03P004A101F1_054.ab1   418 
  422  C USDA018R_F08_BE443797Ta14P035B03P004A101R1_054.ab1   582 
Contig length: old 1003, new 1003

Contig length: old 1003, new 1003
New start: 0