No. words: 1452; after pruning: 1426


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:684)  658  0.00 0.15 0.00  USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1        1   685 (49)  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   (32)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   718 
   64    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1    31 
   76  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   643 
   80    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1    47 
   84  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   635 
   92    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1    59 
  112  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   607 
  120    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1    87 
  136  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   583 
  140    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   107 
  176  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   543 
  180    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   147 
  196  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   523 
  204    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   171 
  536  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   183 
  584    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   551 
  588  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1   131 
  672    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   639 
  676  C USDA024R_F08_BE443797Ta14P043F07P004A041R1_054.ab1    43 
  696    USDA024F_F08_BE443797Ta14P043F07P004A041F1_054.ab1   663 
Contig length: old 767, new 767

Contig length: old 767, new 767
New start: 0