No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:673)  652  0.00 0.00 0.00  USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1        1   674 (50)  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   (44)   674     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   718 
   64    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1    20 
   84  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   635 
   88    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1    44 
  136  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   583 
  140    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1    96 
  328  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   391 
  332    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   288 
  488  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   231 
  492    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   448 
  540  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   179 
  548    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   504 
  552  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   167 
  564    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   520 
  568  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   151 
  576    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   532 
  580  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   139 
  592    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   548 
  600  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   119 
  604    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   560 
  608  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1   111 
  616    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   572 
  620  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1    99 
  644    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   600 
  656  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1    63 
  684    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   640 
  692  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1    27 
  696    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   652 
  708  C USDA024R_G08_BE443797Ta15P043F07P004A041R1_052.ab1    11 
  712    USDA024F_G08_BE443797Ta15P043F07P004A041F1_052.ab1   668 
Contig length: old 768, new 768

Contig length: old 768, new 768
New start: 0