No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 4.0 (1,1:452)  432  0.00 0.22 0.44  USDA022F_H02_BE443797Ta16P043G07P004A101F1_002.ab1        2   454 (50)  C USDA022R_H02_BE443797Ta16P043G07P004A101R1_002.ab1   (57)   452     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C USDA022R_H02_BE443797Ta16P043G07P004A101R1_002.ab1   509 
  330    USDA022F_H02_BE443797Ta16P043G07P004A101F1_002.ab1   273 
  338  C USDA022R_H02_BE443797Ta16P043G07P004A101R1_002.ab1   172 
  414    USDA022F_H02_BE443797Ta16P043G07P004A101F1_002.ab1   357 
  418  C USDA022R_H02_BE443797Ta16P043G07P004A101R1_002.ab1    92 
  466    USDA022F_H02_BE443797Ta16P043G07P004A101F1_002.ab1   409 
Contig length: old 560, new 561

Contig length: old 561, new 561
New start: 0