No. words: 1590; after pruning: 1564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:981)  562  1.32 0.00 0.00  USDA018F_A09_BE443797Ta17P035B03P004A101F1_079.ab1      185   792 (0)  C USDA018R_A09_BE443797Ta17P035B03P004A101R1_079.ab1   (0)   798   191 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1    USDA018F_A09_BE443797Ta17P035B03P004A101F1_079.ab1     1 
  404  C USDA018R_A09_BE443797Ta17P035B03P004A101R1_079.ab1   579 
Contig length: old 982, new 982

Contig length: old 982, new 982
New start: 0