No. words: 1434; after pruning: 1408


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:684)  658  0.00 0.15 0.00  USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1        1   685 (48)  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   (15)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   701 
   47    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1    31 
   59  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   643 
   63    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1    47 
   71  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   631 
   75    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1    59 
   99  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   603 
  103    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1    87 
  119  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   583 
  123    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   107 
  151  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   551 
  167    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   151 
  175  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   527 
  187    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   171 
  199  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   503 
  207    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   191 
  307  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   395 
  315    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   299 
  439  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   263 
  443    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   427 
  471  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   231 
  475    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   459 
  519  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   183 
  531    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   515 
  535  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   167 
  547    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   531 
  555  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   147 
  559    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   543 
  583  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   119 
  587    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   571 
  591  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   111 
  595    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   579 
  599  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1   103 
  655    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   639 
  659  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1    43 
  667    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   651 
  671  C USDA024R_A09_BE443797Ta17P043F07P004A041R1_079.ab1    31 
  683    USDA024F_A09_BE443797Ta17P043F07P004A041F1_079.ab1   667 
Contig length: old 749, new 749

Contig length: old 749, new 749
New start: 0