No. words: 1595; after pruning: 1569


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:989)  573  0.33 0.00 0.00  USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1      158   762 (0)  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   (0)   833   229 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1     1 
  253  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   738 
  257    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   257 
  325  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   666 
  333    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   333 
  341  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   650 
  349    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   349 
  361  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   630 
  369    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   369 
  377  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   614 
  385    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   385 
  389  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   602 
  393    USDA018F_B09_BE443797Ta18P035B03P004A101F1_077.ab1   393 
  413  C USDA018R_B09_BE443797Ta18P035B03P004A101R1_077.ab1   578 
Contig length: old 990, new 990

Contig length: old 990, new 990
New start: 0