No. words: 1456; after pruning: 1430


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.3 (1,1:693)  663  0.00 0.29 0.00  USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1        1   693 (49)  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   (19)   695     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   714 
   60    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1    39 
   80  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   635 
   88    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1    67 
  172  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   543 
  176    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   155 
  192  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   523 
  200    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   179 
  236  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   479 
  240    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   219 
  320  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   395 
  328    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   307 
  484  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   231 
  488    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   467 
  532  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   183 
  572    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   551 
  576  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   139 
  580    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   559 
  584  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   131 
  600    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   579 
  604  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1   111 
  608    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   587 
  620  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1    95 
  644    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   623 
  652  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1    63 
  680    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   659 
  688  C USDA024R_C09_BE443797Ta19P043F07P004A041R1_075.ab1    27 
  708    USDA024F_C09_BE443797Ta19P043F07P004A041F1_075.ab1   687 
Contig length: old 762, new 763

Contig length: old 763, new 763
New start: 0