No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 14.8 (1,1:680)  653  0.00 0.00 0.00  USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1        7   681 (49)  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   (37)   675     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   712 
   57    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1    26 
   81  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   632 
   85    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1    54 
  173  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   540 
  177    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   146 
  529  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   184 
  557    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   526 
  565  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   148 
  569    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   538 
  593  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   120 
  597    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   566 
  601  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   112 
  609    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   578 
  613  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1   100 
  645    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   614 
  653  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1    60 
  657    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   626 
  661  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1    52 
  681    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   650 
  685  C USDA024R_D09_BE443797Ta20P043F07P004A041R1_073.ab1    28 
  693    USDA024F_D09_BE443797Ta20P043F07P004A041F1_073.ab1   662 
Contig length: old 761, new 761

Contig length: old 761, new 761
New start: 0