No. words: 1669; after pruning: 1643


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:983)  643  0.29 0.29 0.00  USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1      105   787 (0)  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   (0)   882   198 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1    USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1     1 
  316  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   669 
  328    USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1   328 
  332  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   653 
  336    USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1   336 
  360  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   625 
  364    USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1   364 
  368  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   617 
  376    USDA018F_E09_BE443797Ta21P035B03P004A101F1_071.ab1   376 
  400  C USDA018R_E09_BE443797Ta21P035B03P004A101R1_071.ab1   585 
Contig length: old 984, new 984

Contig length: old 984, new 984
New start: 0