No. words: 1453; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:684)  658  0.00 0.15 0.00  USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1        1   685 (52)  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   (30)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   716 
   62    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1    31 
   82  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   635 
   90    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1    59 
  114  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   603 
  118    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1    87 
  134  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   583 
  138    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   107 
  194  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   523 
  198    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   167 
  322  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   395 
  330    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   299 
  458  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   259 
  462    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   431 
  534  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   183 
  562    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   531 
  566  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   151 
  582    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   551 
  586  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1   131 
  614    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   583 
  618  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1    99 
  646    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   615 
  650  C USDA024R_E09_BE443797Ta21P043F07P004A041R1_071.ab1    67 
  698    USDA024F_E09_BE443797Ta21P043F07P004A041F1_071.ab1   667 
Contig length: old 768, new 768

Contig length: old 768, new 768
New start: 0