No. words: 1529; after pruning: 1503


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:984)  517  0.37 0.00 0.00  USDA018F_F09_BE443797Ta22P035B03P004A101F1_069.ab1      194   737 (0)  C USDA018R_F09_BE443797Ta22P035B03P004A101R1_069.ab1   (0)   792   249 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    USDA018F_F09_BE443797Ta22P035B03P004A101F1_069.ab1     1 
  405  C USDA018R_F09_BE443797Ta22P035B03P004A101R1_069.ab1   581 
  433    USDA018F_F09_BE443797Ta22P035B03P004A101F1_069.ab1   433 
  437  C USDA018R_F09_BE443797Ta22P035B03P004A101R1_069.ab1   549 
  453    USDA018F_F09_BE443797Ta22P035B03P004A101F1_069.ab1   453 
  457  C USDA018R_F09_BE443797Ta22P035B03P004A101R1_069.ab1   529 
Contig length: old 985, new 985

Contig length: old 985, new 985
New start: 0