No. words: 1440; after pruning: 1414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:673)  652  0.00 0.00 0.00  USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1        1   674 (48)  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   (44)   674     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   718 
   64    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1    20 
   84  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   635 
   88    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1    44 
  100  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   619 
  104    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1    60 
  112  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   607 
  120    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1    76 
  136  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   583 
  140    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1    96 
  536  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   183 
  548    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   504 
  552  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   167 
  568    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   524 
  572  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   147 
  576    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   532 
  600  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   119 
  604    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   560 
  608  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1   111 
  616    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   572 
  620  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1    99 
  624    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   580 
  632  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1    87 
  652    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   608 
  656  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1    63 
  660    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   616 
  668  C USDA024R_F09_BE443797Ta22P043F07P004A041R1_069.ab1    51 
  696    USDA024F_F09_BE443797Ta22P043F07P004A041F1_069.ab1   652 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0