No. words: 1562; after pruning: 1536


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:979)  530  1.55 0.00 0.00  USDA018F_G09_BE443797Ta23P035B03P004A101F1_067.ab1      163   744 (0)  C USDA018R_G09_BE443797Ta23P035B03P004A101R1_067.ab1   (0)   818   237 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    USDA018F_G09_BE443797Ta23P035B03P004A101F1_067.ab1     1 
  404  C USDA018R_G09_BE443797Ta23P035B03P004A101R1_067.ab1   577 
Contig length: old 980, new 980

Contig length: old 980, new 980
New start: 0