No. words: 1208; after pruning: 1182


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:672)  509  0.19 0.00 0.00  USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1       61   595 (0)  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   (0)   613    79 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1     1 
  156  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   518 
  160    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   160 
  196  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   478 
  200    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   200 
  280  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   394 
  288    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   288 
  296  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   378 
  316    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   316 
  348  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   326 
  360    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   360 
  380  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   294 
  400    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   400 
  408  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   266 
  424    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   424 
  428  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   246 
  460    USDA024F_G09_BE443797Ta23P043F07P004A041F1_067.ab1   460 
  464  C USDA024R_G09_BE443797Ta23P043F07P004A041R1_067.ab1   210 
Contig length: old 673, new 673

Contig length: old 673, new 673
New start: 0