No. words: 1633; after pruning: 1607


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:993)  594  1.10 0.00 0.00  USDA018F_A07_BE443797Td01P035B03P004A101F1_063.ab1      108   746 (0)  C USDA018R_A07_BE443797Td01P035B03P004A101R1_063.ab1   (0)   887   249 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1    USDA018F_A07_BE443797Td01P035B03P004A101F1_063.ab1     1 
  233  C USDA018R_A07_BE443797Td01P035B03P004A101R1_063.ab1   762 
  237    USDA018F_A07_BE443797Td01P035B03P004A101F1_063.ab1   237 
  321  C USDA018R_A07_BE443797Td01P035B03P004A101R1_063.ab1   674 
  385    USDA018F_A07_BE443797Td01P035B03P004A101F1_063.ab1   385 
  393  C USDA018R_A07_BE443797Td01P035B03P004A101R1_063.ab1   602 
Contig length: old 994, new 994

Contig length: old 994, new 994
New start: 0 
S Change at: 197; seg lengths: entry 1, contig 1