No. words: 1445; after pruning: 1419


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 14.6 (1,1:677)  654  0.00 0.00 0.00  USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1        2   678 (51)  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   (39)   677     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   716 
   67    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1    29 
   75  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   642 
   79    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1    41 
   83  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   634 
   91    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1    53 
  135  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   582 
  139    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   101 
  195  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   522 
  199    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   161 
  231  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   486 
  243    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   205 
  327  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   390 
  331    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   293 
  487  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   230 
  491    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   453 
  539  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   178 
  547    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   509 
  559  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   158 
  563    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   525 
  567  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   150 
  587    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   549 
  599  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   118 
  603    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   565 
  607  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1   110 
  611    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   573 
  619  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1    98 
  635    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   597 
  639  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1    78 
  647    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   609 
  651  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1    66 
  663    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   625 
  679  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1    38 
  683    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   645 
  687  C USDA024R_A07_BE443797Td01P043F07P004A041R1_063.ab1    30 
  699    USDA024F_A07_BE443797Td01P043F07P004A041F1_063.ab1   661 
Contig length: old 767, new 767

Contig length: old 767, new 767
New start: 0