No. words: 1435; after pruning: 1409


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:684)  654  0.00 0.29 0.00  USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1        1   684 (50)  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   (15)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   701 
   50    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1    33 
   70  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   632 
   86    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1    69 
   98  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   604 
  102    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1    85 
  166  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   536 
  170    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   153 
  178  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   524 
  186    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   169 
  310  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   392 
  314    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   297 
  418  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   284 
  422    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   405 
  470  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   232 
  478    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   461 
  518  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   184 
  550    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   533 
  554  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   148 
  562    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   545 
  566  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1   136 
  646    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   629 
  650  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1    52 
  670    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   653 
  674  C USDA024R_B07_BE443797Td02P043F07P004A041R1_061.ab1    28 
  678    USDA024F_B07_BE443797Td02P043F07P004A041F1_061.ab1   661 
Contig length: old 750, new 751

Contig length: old 751, new 751
New start: 0