No. words: 1569; after pruning: 1543


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:1003)  509  1.24 0.35 0.18  USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1      185   748 (0)  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   (0)   821   257 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1    USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1     1 
  240  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   765 
  244    USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1   244 
  336  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   669 
  352    USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1   352 
  356  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   649 
  360    USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1   360 
  408  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   597 
  416    USDA018F_C07_BE443797Td03P035B03P004A101F1_059.ab1   416 
  420  C USDA018R_C07_BE443797Td03P035B03P004A101R1_059.ab1   585 
Contig length: old 1004, new 1004

Contig length: old 1004, new 1004
New start: 0