No. words: 1457; after pruning: 1431


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:686)  656  0.00 0.29 0.00  USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1        1   686 (50)  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   (33)   688     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   721 
   66    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1    31 
   78  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   644 
   82    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1    47 
   86  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   636 
   90    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1    55 
  106  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   616 
  110    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1    75 
  114  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   608 
  118    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1    83 
  138  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   584 
  142    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   107 
  202  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   520 
  210    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   175 
  362  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   360 
  366    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   331 
  542  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   180 
  550    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   515 
  554  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   168 
  566    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   531 
  574  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1   148 
  578    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   543 
  634  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1    88 
  650    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   615 
  658  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1    64 
  662    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   627 
  670  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1    52 
  690    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   655 
  694  C USDA024R_C07_BE443797Td03P043F07P004A041R1_059.ab1    28 
  702    USDA024F_C07_BE443797Td03P043F07P004A041F1_059.ab1   667 
Contig length: old 770, new 771

Contig length: old 771, new 771
New start: 0