No. words: 1435; after pruning: 1409


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:684)  658  0.00 0.15 0.00  USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1        1   685 (49)  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   (15)   686     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   701 
   47    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1    31 
   59  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   643 
   63    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1    47 
   67  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   635 
   71    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1    55 
   99  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   603 
  103    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1    87 
  119  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   583 
  123    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1   107 
  175  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   527 
  183    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1   167 
  519  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1   183 
  599    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1   583 
  603  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1    99 
  667    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1   651 
  671  C USDA024R_D07_BE443797Td04P043F07P004A041R1_057.ab1    31 
  695    USDA024F_D07_BE443797Td04P043F07P004A041F1_057.ab1   679 
Contig length: old 750, new 750

Contig length: old 750, new 750
New start: 0