No. words: 1329; after pruning: 1303


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:684)  575  0.00 0.00 0.00  USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1       91   685 (49)  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   (0)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1     1 
  283  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   403 
  287    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   287 
  403  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   283 
  407    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   407 
  423  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   263 
  427    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   427 
  455  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   231 
  459    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   459 
  503  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   183 
  515    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   515 
  519  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   167 
  531    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   531 
  539  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   147 
  547    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   547 
  555  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   131 
  559    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   559 
  579  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1   107 
  591    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   591 
  595  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1    91 
  655    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   655 
  659  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1    27 
  667    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   667 
  671  C USDA024R_E07_BE443797Td05P043F07P004A041R1_055.ab1    15 
  675    USDA024F_E07_BE443797Td05P043F07P004A041F1_055.ab1   675 
Contig length: old 734, new 734

Contig length: old 734, new 734
New start: 0