No. words: 1384; after pruning: 1358


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.9 (1,1:684)  633  0.15 0.00 0.00  USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1        5   663 (0)  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   (40)   681    23 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   721 
   68    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1    32 
   76  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   646 
   80    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1    44 
   84  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   638 
   88    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1    52 
  136  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   586 
  140    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   104 
  176  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   546 
  180    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   144 
  200  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   522 
  204    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   168 
  384  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   338 
  388    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   352 
  416  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   306 
  464    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   428 
  468  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   254 
  504    USDA024F_F07_BE443797Td06P043F07P004A041F1_053.ab1   468 
  512  C USDA024R_F07_BE443797Td06P043F07P004A041R1_053.ab1   210 
Contig length: old 721, new 721

Contig length: old 721, new 721
New start: 0