No. words: 1503; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:997)  463  1.19 0.20 0.00  USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1      187   690 (0)  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   (0)   813   309 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1     1 
  194  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   806 
  205    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1   205 
  338  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   661 
  346    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1   346 
  350  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   649 
  354    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1   354 
  366  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   633 
  370    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1   370 
  386  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   613 
  390    USDA018F_G07_BE443797Td07P035B03P004A101F1_051.ab1   390 
  406  C USDA018R_G07_BE443797Td07P035B03P004A101R1_051.ab1   593 
Contig length: old 998, new 998

Contig length: old 998, new 998
New start: 0