No. words: 1448; after pruning: 1422


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.5 (1,1:681)  655  0.00 0.00 0.00  USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1        5   682 (51)  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   (37)   678     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   715 
   61    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1    28 
  165  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   551 
  169    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   136 
  189  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   527 
  197    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   164 
  461  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   255 
  465    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   432 
  485  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   231 
  493    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   460 
  533  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   183 
  545    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   512 
  549  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   167 
  561    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   528 
  565  C USDA024R_G07_BE443797Td07P043F07P004A041R1_051.ab1   151 
  709    USDA024F_G07_BE443797Td07P043F07P004A041F1_051.ab1   676 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0