No. words: 1510; after pruning: 1484


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:977)  492  0.94 0.00 0.19  USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1      173   704 (0)  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   (0)   806   276 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1     1 
  324  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   655 
  332    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1   332 
  348  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   631 
  364    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1   364 
  384  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   595 
  388    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1   388 
  392  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   587 
  400    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1   400 
  404  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   575 
  424    USDA018F_H07_BE443797Td08P035B03P004A101F1_049.ab1   424 
  432  C USDA018R_H07_BE443797Td08P035B03P004A101R1_049.ab1   547 
Contig length: old 978, new 978

Contig length: old 978, new 978
New start: 0 
S Change at: 184; seg lengths: entry 1, contig 1