No. words: 1450; after pruning: 1424


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.2 (1,1:683)  658  0.00 0.15 0.00  USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1        1   684 (49)  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   (32)   685     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   717 
   63    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1    30 
  115  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   603 
  119    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1    86 
  487  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   231 
  491    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   458 
  535  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   183 
  547    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   514 
  559  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   159 
  563    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   530 
  571  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   147 
  579    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   546 
  583  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   135 
  595    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   562 
  603  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1   115 
  683    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   650 
  691  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1    27 
  695    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   662 
  703  C USDA024R_H07_BE443797Td08P043F07P004A041R1_049.ab1    15 
  707    USDA024F_H07_BE443797Td08P043F07P004A041F1_049.ab1   674 
Contig length: old 766, new 766

Contig length: old 766, new 766
New start: 0