No. words: 1004; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:458)  434  0.00 0.22 0.65  USDA022F_H01_BE443797Td08P043G07P004A101F1_001.ab1        1   461 (45)  C USDA022R_H01_BE443797Td08P043G07P004A101R1_001.ab1   (39)   459     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C USDA022R_H01_BE443797Td08P043G07P004A101R1_001.ab1   498 
  261    USDA022F_H01_BE443797Td08P043G07P004A101F1_001.ab1   221 
  329  C USDA022R_H01_BE443797Td08P043G07P004A101R1_001.ab1   170 
  401    USDA022F_H01_BE443797Td08P043G07P004A101F1_001.ab1   361 
  409  C USDA022R_H01_BE443797Td08P043G07P004A101R1_001.ab1    90 
  425    USDA022F_H01_BE443797Td08P043G07P004A101F1_001.ab1   385 
  437  C USDA022R_H01_BE443797Td08P043G07P004A101R1_001.ab1    62 
  445    USDA022F_H01_BE443797Td08P043G07P004A101F1_001.ab1   405 
Contig length: old 545, new 546

Contig length: old 546, new 546
New start: 0