No. words: 1571; after pruning: 1545


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:1000)  534  0.53 0.00 0.18  USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1      193   763 (0)  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   (0)   808   239 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1    USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1     1 
  330  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   672 
  334    USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1   334 
  346  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   656 
  354    USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1   354 
  358  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   644 
  362    USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1   362 
  374  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   628 
  382    USDA018F_A08_BE443797Td09P035B03P004A101F1_064.ab1   382 
  422  C USDA018R_A08_BE443797Td09P035B03P004A101R1_064.ab1   580 
Contig length: old 1001, new 1001

Contig length: old 1001, new 1001
New start: 0